Publications | Gillian McHugo

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Volcano plot showing the results of the RESP contrast for the peripheral blood mononuclear cell (PBMC) samples at 34 days post-infection (dpi). PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Tissue, days post-infection (dpi) and the top 10 most significant genes with increased and decreased expression with valid gene symbols for the response contrasts. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Supporting information for Functional genomics of trypanotolerant and trypanosusceptible cattle infected with 𝘛𝘳𝘺𝘱𝘢𝘯𝘰𝘴𝘰𝘮𝘢 𝘤𝘰𝘯𝘨𝘰𝘭𝘦𝘯𝘴𝘦 across multiple time points and tissues. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Functional genomics of trypanotolerant and trypanosusceptible cattle infected with 𝘛𝘳𝘺𝘱𝘢𝘯𝘰𝘴𝘰𝘮𝘢 𝘤𝘰𝘯𝘨𝘰𝘭𝘦𝘯𝘴𝘦 across multiple time points and tissues. PLOS Neglected Tropical Diseases, 19(8), e0012882.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). EnrichmentMap network of significantly enriched gene ontology (GO) terms identified from g:Profiler functional enrichment of significantly differentially expressed genes (DEGs) for the response contrasts at all time points. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Differential expression analysis results including the probe ID, gene ID, log₂ fold change, and 𝘗adj. for each of the 64 contrasts. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Diagram showing the experimental design and study workflow examining N'Dama (NDAM) and Boran (BORA) cattle. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Days post-infection, tissues, numbers of N'Dama (NDAM) and Boran (BORA) samples, and sources of microarray data used in this study before and after sample filtering. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Bar charts showing the numbers of significantly differentially expressed genes for the different contrasts. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). A. Principal component analysis (PCA) of the microarray data set with samples coloured according to tissue, which include blood (BL), liver (LI), lymph node (LN), and spleen (SP) samples, and with the shape indicating the population, which include N'Dama (NDAM) and Boran (BORA) cattle. PLOS Neglected Tropical Diseases.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, Said Ismael Ng'ang'a, Laurent A.F. Frantz, John A. Browne, Michael Salter-Townshend, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Integrative genomics identifies candidate genes underlying trypanotolerance in hybrid African cattle. bioRxiv, 2025.07.30.667693.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Transcription profiling time series of PBMC from two cattle breeds infected with 𝘛𝘳𝘺𝘱𝘢𝘯𝘰𝘴𝘰𝘮𝘢 𝘤𝘰𝘯𝘨𝘰𝘭𝘦𝘯𝘴𝘦. BioStudies.

Cite EBI Link Download

John F. O'Grady, Gillian P. McHugo, James A. Ward, Thomas J. Hall, Sarah L. Faherty O'Donnell, Carolina N. Correia, John A. Browne, Michael McDonald, Eamonn Gormley, Valentina Riggio, James G. D. Prendergast, Emily L. Clark, Hubert Pausch, Kieran G. Meade, Isobel C. Gormley, Stephen V. Gordon, David E. MacHugh (2025). Integrative genomics sheds light on the immunogenetics of tuberculosis in cattle. Repository copy of journal article. ETH Zurich.

Cite DOI Link Download

John F. O'Grady, Gillian P. McHugo, James A. Ward, Thomas J. Hall, Sarah L. Faherty O'Donnell, Carolina N. Correia, John A. Browne, Michael McDonald, Eamonn Gormley, Valentina Riggio, James G. D. Prendergast, Emily L. Clark, Hubert Pausch, Kieran G. Meade, Isobel C. Gormley, Stephen V. Gordon, David E. MacHugh (2025). Integrative genomics sheds light on the immunogenetics of tuberculosis in cattle. Communications Biology, 8(1), 479.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh (2025). Functional genomics of trypanotolerant and trypanosusceptible cattle infected with 𝘛𝘳𝘺𝘱𝘢𝘯𝘰𝘴𝘰𝘮𝘢 𝘤𝘰𝘯𝘨𝘰𝘭𝘦𝘯𝘴𝘦 across multiple time points and tissues. bioRxiv, 2025.01.31.635858.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, Said Ismael Ng'ang'a, Laurent A. F. Frantz, Michael Salter-Townshend, Emmeline W. Hill, Grace M. O'Gorman, Kieran G. Meade, Thomas J. Hall, David E. MacHugh (2025). Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations. Heredity, 134(1), 49–63.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, Said Ismael Ng'ang'a, Laurent A. F. Frantz, Michael Salter-Townshend, Emmeline W. Hill, Grace M. O'Gorman, Kieran G. Meade, Thomas J. Hall, David E. MacHugh (2024). Data from: Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations. Dryad.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, Said Ismael Ng'ang'a, Laurent A.F. Frantz, Michael Salter-Townshend, Emmeline W. Hill, Grace M. O'Gorman, Kieran G. Meade, Thomas J. Hall, David E. MacHugh (2024). Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations. Research Square.

Cite DOI Link Download

Gillian P. McHugo (2024). Code for Integrative genomics of trypanotolerant and trypanosusceptible hybrid African cattle using genomic and transcriptomic data. Zenodo.

Cite DOI Link Download

Gillian P. McHugo (2024). Code for Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations. Zenodo.

Cite DOI Link Download

Gillian P. McHugo (2024). Code for Functional genomics of trypanotolerant and trypanosusceptible cattle infected with 𝘛𝘳𝘺𝘱𝘢𝘯𝘰𝘴𝘰𝘮𝘢 𝘤𝘰𝘯𝘨𝘰𝘭𝘦𝘯𝘴𝘦 across multiple time points and tissues. Zenodo.

Cite DOI Link Download

Gillian P. McHugo (2024). Supplementary material for Integrative population and functional genomics of African cattle. Zenodo.

Cite DOI Link Download

Gillian P. McHugo, James A. Ward, Said Ismael Ng'ang'a, Laurent A. F. Frantz, Michael Salter-Townshend, Emmeline W. Hill, Grace M. O'Gorman, Kieran G. Meade, Thomas J. Hall, David E. MacHugh (2024). Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations. bioRxiv, 2024.06.20.599852.

Cite DOI Link Download

Thomas J. Hall, Gillian P. McHugo, Michael P. Mullen, James A. Ward, Kate E. Killick, John A. Browne, Stephen V. Gordon, David E. MacHugh (2024). Integrative and comparative genomic analyses of mammalian macrophage responses to intracellular mycobacterial pathogens. Tuberculosis, 147, 102453.

Cite DOI Link Download

Pamela A. Kelly, Gillian P. McHugo, Caitriona Scaife, Susan Peters, M. Lynn Stevenson, Jennifer S. McKay, David E. MacHugh, Irene Lara-Saez, Rory Breathnach (2024). Unveiling the role of endoplasmic reticulum stress pathways in canine demodicosis. Parasite Immunology, 46(4), e13033.

Cite DOI Link Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A. S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A. F. Frantz, Michael Salter-Townshend, David E. MacHugh (2024). Author response for Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Peer review response. Royal Society Open Science.

Cite DOI Link Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A. S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A. F. Frantz, Michael Salter-Townshend, David E. MacHugh (2024). Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Royal Society Open Science, 11(3), 231388.

Cite DOI Link Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A.S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A.F. Frantz, Michael Salter-Townshend, David MacHugh (2024). Ward_𝘦𝘵_𝘢𝘭.(2023)_Table_S8 from Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Royal Society Open Science.

Cite DOI URL Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A.S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A.F. Frantz, Michael Salter-Townshend, David MacHugh (2024). Ward_𝘦𝘵_𝘢𝘭.(2023)_Table_S3 from Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Royal Society Open Science.

Cite DOI URL Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A.S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A.F. Frantz, Michael Salter-Townshend, David MacHugh (2024). Ward_𝘦𝘵_𝘢𝘭.(2023)_Table_S2 from Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Royal Society Open Science.

Cite DOI URL Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A.S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A.F. Frantz, Michael Salter-Townshend, David MacHugh (2024). Ward_𝘦𝘵_𝘢𝘭.(2023)_Supp_Mat_REVISION from Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Royal Society Open Science.

Cite DOI URL Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A. S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A. F. Frantz, Michael Salter-Townshend, David E. MacHugh (2024). Supplementary material from Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. Collection. Figshare.

Cite DOI Link Download

John F. O'Grady, Gillian P. McHugo, James A. Ward, Thomas J. Hall, Sarah L. Faherty O'Donnell, Carolina N. Correia, John A. Browne, Michael McDonald, Eamonn Gormley, Valentina Riggio, James G. D. Prendergast, Emily L. Clark, Hubert Pausch, Kieran G. Meade, Isobel C. Gormley, Stephen V. Gordon, David E. MacHugh (2024). Integrative genomics sheds light on the immunobiology of tuberculosis in cattle. bioRxiv, 2024.02.27.582295.

Cite DOI Link Download

John Francis O'Grady, Gillian P. McHugo, James A. Ward, Thomas J. Hall, Sarah L. Faherty O'Donnell, Carolina N. Correia, John A. Browne, Michael McDonald, Eamonn Gormley, Valentina Riggio, James G. D. Prendergast, Emily L. Clark, Hubert Pausch, Kieran G. Meade, Isobel C. Gormley, Stephen V. Gordon, David E. MacHugh (2024). Integrative genomics sheds light on the immunobiology of tuberculosis in cattle. Zenodo.

Cite DOI Link Download

John Francis O'Grady, Gillian P. McHugo, James A. Ward, Thomas J. Hall, Sarah L. Faherty O'Donnell, Carolina N. Correia, John A. Browne, Michael McDonald, Eamonn Gormley, Valentina Riggio, James G. D. Prendergast, Emily L. Clark, Hubert Pausch, Kieran G. Meade, Isobel C. Gormley, Stephen V. Gordon, David E. MacHugh (2024). Integrative genomics sheds light on the immunobiology of tuberculosis in cattle. Gene Expression Omnibus.

Cite NIH Link Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A. S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A. F. Frantz, Michael Salter-Townshend, David E. MacHugh (2023). Population genetics of Latin American Criollo cattle. European Nucleotide Archive.

Cite EBI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴. Frontiers in Immunology, 14, 1265038.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). DataSheet_6_Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴.xlsx. Frontiers in Immunology.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). DataSheet_5_Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴.xlsx. Frontiers in Immunology.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). DataSheet_4_Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴.xlsx. Frontiers in Immunology.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). DataSheet_3_Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴.xlsx. Frontiers in Immunology.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). DataSheet_2_Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴.xlsx. Frontiers in Immunology.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). DataSheet_1_Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴.xlsx. Frontiers in Immunology.

Cite DOI Link Download

James A. Ward, Said I. Ng’ang’a, Imtiaz A.S. Randhawa, Gillian P. McHugo, John F O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A.F. Frantz, Michael Salter-Townshend, David E. MacHugh (2023). Genomic insights into the population history and adaptive traits of Latin American Criollo cattle. bioRxiv, 2023.09.10.556512.

Cite DOI Link Download

Pamela A. Kelly, Gillian P. McHugo, Caitriona Scaife, Susan Peters, M. Lynn Stevenson, Jennifer S. McKay, David E. MacHugh, Irene Lara-Saez, Rory Breathnach (2023). Unveiling the role of endoplasmic reticulum stress pathways in canine demodicosis. bioRxiv, 2023.08.11.552979.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). Preferential differential gene expression within the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴. bioRxiv, 2023.07.21.550071.

Cite DOI Link Download

Thomas J. Hall, Gillian P. McHugo, Michael P. Mullen, James A. Ward, Kate E. Killick, John A. Browne, Stephen V. Gordon, David E. MacHugh (2023). Integrative and comparative genomic analyses of mammalian macrophage responses to intracellular mycobacterial pathogens. bioRxiv, 2023.07.14.549042.

Cite DOI Link Download

Sajad A. Bhat, Mahmoud Elnaggar, Thomas J. Hall, Gillian P. McHugo, Cian Reid, David E. MacHugh, Kieran G. Meade (2023). Preferential differential gene expression in the WC1.1⁺ γδ T cell compartment in cattle naturally infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴. BioStudies.

Cite EBI Link Download

Carolina N. Correia, Gillian P. McHugo, John A. Browne, Kirsten E. McLoughlin, Nicolas C. Nalpas, David A. Magee, Adam O. Whelan, Bernardo Villarreal-Ramos, H. Martin Vordermeier, Eamonn Gormley, Stephen V. Gordon, David E. MacHugh (2022). RNA-seq transcriptional profile of PPD-b stimulated peripheral blood from cattle infected with 𝘔. 𝘣𝘰𝘷𝘪𝘴 across an experimental time course. European Nucleotide Archive.

Cite EBI Link Download

Carolina N. Correia, Gillian P. McHugo, John A. Browne, Kirsten E. McLoughlin, Nicolas C. Nalpas, David A. Magee, Adam O. Whelan, Bernardo Villarreal-Ramos, H. Martin Vordermeier, Eamonn Gormley, Stephen V. Gordon, David E. MacHugh (2022). High-resolution transcriptomics of bovine purified protein derivative-stimulated peripheral blood from cattle infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴 across an experimental time course. Tuberculosis, 136, 102235.

Cite DOI Link Download

James A. Ward, Gillian P. McHugo, Michael J. Dover, Thomas J. Hall, Said Ismael Ng'ang'a, Tad S. Sonstegard, Daniel G. Bradley, Laurent A.F. Frantz, Michael Salter-Townshend, David E. MacHugh (2022). Genome-wide local ancestry and evidence for mitonuclear co-adaptation in African hybrid cattle populations (𝘉𝘰𝘴 𝘵𝘢𝘶𝘳𝘶𝘴/𝘪𝘯𝘥𝘪𝘤𝘶𝘴). Ward 𝘦𝘵 𝘢𝘭. 2022. Mendeley Data.

Cite DOI Link Download

James A. Ward, Gillian P. McHugo, Michael J. Dover, Thomas J. Hall, Said Ismael Ng'ang'a, Tad S. Sonstegard, Daniel G. Bradley, Laurent A.F. Frantz, Michael Salter-Townshend, David E. MacHugh (2022). Genome-wide local ancestry and evidence for mitonuclear coadaptation in African hybrid cattle populations. iScience, 25(7), 104672.

Cite DOI Link Download

Carolina N. Correia, Gillian P. McHugo, John A. Browne, Kirsten E. McLoughlin, Nicolas C. Nalpas, David A. Magee, Adam O. Whelan, Bernardo Villarreal-Ramos, H. Martin Vordermeier, Eamonn Gormley, Stephen V. Gordon, David E. MacHugh (2022). High-resolution transcriptomics of bovine purified protein derivative-stimulated peripheral blood from cattle infected with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴 across an experimental time course. bioRxiv, 2022.04.19.488769.

Cite DOI Link Download

James A. Ward, Gillian P. McHugo, Michael J. Dover, Thomas J. Hall, Said Ismael Ng'ang'a, Tad S. Sonstegard, Daniel G. Bradley, Laurent A.F. Frantz, Michael Salter-Townshend, David E. MacHugh (2022). Genome-wide local ancestry and direct evidence for mitonuclear coadaptation in African hybrid cattle populations (𝘉𝘰𝘴 𝘵𝘢𝘶𝘳𝘶𝘴/𝘪𝘯𝘥𝘪𝘤𝘶𝘴). SSRN.

Cite DOI Link Download

James A. Ward, Gillian P. McHugo, Michael J. Dover, Thomas J. Hall, Said Ismael Ng'ang'a, Tad S. Sonstegard, Daniel G. Bradley, Laurent A.F. Frantz, Michael Salter-Townshend, David E. MacHugh (2021). Genome-wide local ancestry and direct evidence for mitonuclear co-adaptation in African hybrid cattle populations (𝘉𝘰𝘴 𝘵𝘢𝘶𝘳𝘶𝘴/𝘪𝘯𝘥𝘪𝘤𝘶𝘴). bioRxiv, 2021.08.26.457829.

Cite DOI Link Download

Michael J. Dover, Thomas J. Hall, Gillian P. McHugo, David E. MacHugh (2021). A functional and integrative genomics analysis of host response to disease caused by infection with 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘵𝘶𝘣𝘦𝘳𝘤𝘶𝘭𝘰𝘴𝘪𝘴 in humans and 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴 in cattle. 2020 UCD School of Medicine Summer Student Research Awards. Irish Journal of Medical Science, 190(Supplement 4), S135–S136.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. Collection. Figshare.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 8 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 7 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 6 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 5 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 4 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 3 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 2 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Additional file 1 of Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. BMC Genomics, 22, 343.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Donagh P. Berry, Siobhán C. Ring, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2021). Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria: RNA-seq statistics and results. Dryad.

Cite DOI Link Download

Maria Saura, Francesca Bertolini, Christos Palaiokostas (Eds) (2020). Genetic variability in conservation and selection programs in the post-genomics era. Research topic. Frontiers.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2020). Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria. Research Square.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, Siobhán C. Ring, Donagh P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh (2020). Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria.

Cite DOI Link Download

Gillian P. McHugo, Michael J. Dover, David E. MacHugh (2019). Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics. BMC Biology, 17, 98.

Cite DOI Link Download

Gillian P. McHugo, Sam Browett, Imtiaz A. S. Randhawa, Dawn J. Howard, Michael P. Mullen, Ian W. Richardson, Stephen D. E. Park, David A. Magee, Erik Scraggs, Michael J. Dover, Carolina N. Correia, James P. Hanrahan, David E. MacHugh (2019). A population genomics analysis of the native Irish Galway sheep breed: Table_1.docx. Frontiers in Genetics.

Cite DOI Link Download

Gillian P. McHugo, Sam Browett, Imtiaz A. S. Randhawa, Dawn J. Howard, Michael P. Mullen, Ian W. Richardson, Stephen D. E. Park, David A. Magee, Erik Scraggs, Michael J. Dover, Carolina N. Correia, James P. Hanrahan, David E. MacHugh (2019). A population genomics analysis of the native Irish Galway sheep breed. Frontiers in Genetics, 10, 927.

Cite DOI Link Download

Thomas J. Hall, Michael P. Mullen, Kate E. Killick, Gillian P. McHugo, John A. Browne, Carolina N. Correia, Stephen V. Gordon, David E. MacHugh (2019). Integrative genomics of the host response to 𝘔𝘺𝘤𝘰𝘣𝘢𝘤𝘵𝘦𝘳𝘪𝘶𝘮 𝘣𝘰𝘷𝘪𝘴 in bovine alveolar macrophages. 37th International Society for Animal Genetics Conference. ResearchGate.

Cite DOI Link Download

Gillian P. McHugo, Sam Browett, Imtiaz A. S. Randhawa, Dawn J. Howard, Michael P. Mullen, Ian W. Richardson, Stephen D. E. Park, David A. Magee, Erik Scraggs, Michael Dover, Carolina N. Correia, James P. Hanrahan, David E. MacHugh (2019). A population genomics analysis of the native Irish Galway sheep breed. bioRxiv, 645754.

Cite DOI Link Download

Gillian P. McHugo, Grace M. O'Gorman, Emmeline W. Hill, David E. MacHugh (2019). Local ancestry and functional genomics of trypanotolerant and trypanosusceptible admixed African cattle breeds. 47th European Mathematical Genetics Meeting. Human Heredity, 83(5), 250.

Cite DOI Link Download

Sam Browett, Gillian McHugo, Ian W. Richardson, David A. Magee, Stephen D. E. Park, Alan G. Fahey, John F. Kearney, Carolina N. Correia, Imtiaz A.S. Randhawa, David E. MacHugh (2019). Data from: Genomic characterisation of the indigenous Irish Kerry cattle breed. Dryad.

Cite DOI Link Download

Sam Browett, Gillian McHugo, Ian W. Richardson, David A. Magee, Stephen D. E. Park, Alan G. Fahey, John F. Kearney, Carolina N. Correia, Imtiaz A. S. Randhawa, David E. MacHugh (2018). Genomic characterisation of the indigenous Irish Kerry cattle breed: Table6.xlsx. Frontiers in Genetics.

Cite DOI Link Download

Sam Browett, Gillian McHugo, Ian W. Richardson, David A. Magee, Stephen D. E. Park, Alan G. Fahey, John F. Kearney, Carolina N. Correia, Imtiaz A. S. Randhawa, David E. MacHugh (2018). Genomic characterisation of the indigenous Irish Kerry cattle breed: Table1.xlsx. Frontiers in Genetics.

Cite DOI Link Download

Sam Browett, Gillian McHugo, Ian W. Richardson, David A. Magee, Stephen D. E. Park, Alan G. Fahey, John F. Kearney, Carolina N. Correia, Imtiaz A. S. Randhawa, David E. MacHugh (2018). Genomic characterisation of the indigenous Irish Kerry cattle breed: DataSheet1.pdf. Frontiers in Genetics.

Cite DOI Link Download

Sam Browett, Gillian McHugo, Ian W. Richardson, David A. Magee, Stephen D. E. Park, Alan G. Fahey, John F. Kearney, Carolina N. Correia, Imtiaz A. S. Randhawa, David E. MacHugh (2018). Genomic characterisation of the indigenous Irish Kerry cattle breed. Frontiers in Genetics, 9, 51.

Cite DOI Link Download

Sam Browett, Gillian McHugo, Ian W. Richardson, David A. Magee, Stephen D. E. Park, Alan G. Fahey, John F. Kearney, Carolina N. Correia, Imtiaz A. S. Randhawa, David E. MacHugh (2017). Genomic characterisation and conservation genetics of the indigenous Irish Kerry cattle breed. bioRxiv, 210229.

Cite DOI Link Download