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Additional file 1 of Accurate imputation of African cattle genomes using a diverse reference panel

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Said I. Ng'ang'a, James A. Ward, Stephen J. Rossiter, Chris G. Faulkes, Katia Bougiouri, Gillian P. McHugo, Fenton P. D. Cotterill, Atunga Nyachieo, Olaf Thalmann, Ivica Medugorac, Stefan Krebs, Tad S. Sonstegard, Olivier Hanotte, Daniel G. Bradley, Gary Vaughan-Smith, David E. MacHugh, Laurent A. F. Frantz

Days post-infection, tissues, numbers of N'Dama (NDAM) and Boran (BORA) samples, and sources of microarray data used in this study before and after sample filtering

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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh

Differential expression analysis results including the probe ID, gene ID, log₂ fold change, and 𝘗adj. for each of the 64 contrasts

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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh

Supporting information for Functional genomics of trypanotolerant and trypanosusceptible cattle infected with 𝘛𝘳𝘺𝘱𝘢𝘯𝘰𝘴𝘰𝘮𝘢 𝘤𝘰𝘯𝘨𝘰𝘭𝘦𝘯𝘴𝘦 across multiple time points and tissues

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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh

Tissue, days post-infection (dpi) and the top 10 most significant genes with increased and decreased expression with valid gene symbols for the response contrasts

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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh

Transcription profiling time series of PBMC from two cattle breeds infected with 𝘛𝘳𝘺𝘱𝘢𝘯𝘰𝘴𝘰𝘮𝘢 𝘤𝘰𝘯𝘨𝘰𝘭𝘦𝘯𝘴𝘦

Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh

Data from: Genome-wide local ancestry and the functional consequences of admixture in African and European cattle populations

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Gillian P. McHugo, James A. Ward, Said Ismael Ng'ang'a, Laurent A. F. Frantz, Michael Salter-Townshend, Emmeline W. Hill, Grace M. O'Gorman, Kieran G. Meade, Thomas J. Hall, David E. MacHugh

Accurate imputation of African cattle genomes using a diverse reference panel

Said I. Ng'ang'a, James A. Ward, Stephen J. Rossiter, Chris G. Faulkes, Katia Bougiouri, Gillian P. McHugo, Fenton P. D. Cotterill, Atunga Nyachieo, Olaf Thalmann, Ivica Medugorac, Stefan Krebs, Tad S. Sonstegard, Olivier Hanotte, Daniel G. Bradley, Gary Vaughan-Smith, David E. MacHugh, Laurent A. F. Frantz

Supplementary material for Integrative population and functional genomics of African cattle

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Gillian P. McHugo

Ward_𝘦𝘵_𝘢𝘭.(2023)_Supp_Mat_REVISION from Genomic insights into the population history and adaptive traits of Latin American Criollo cattle

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James A. Ward, Said I. Ng'ang'a, Imtiaz A.S. Randhawa, Gillian P. McHugo, John F. O'Grady, Julio M. Flórez, John A. Browne, Ana M. Pérez O'Brien, Antonio J. Landaeta-Hernández, José F. Garcia, Tad S. Sonstegard, Laurent A.F. Frantz, Michael Salter-Townshend, David MacHugh