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A. Principal component analysis (PCA) of the microarray data set with samples coloured according to tissue, which include blood (BL), liver (LI), lymph node (LN), and spleen (SP) samples, and with the shape indicating the population, which include N'Dama (NDAM) and Boran (BORA) cattle
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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh
Bar charts showing the numbers of significantly differentially expressed genes for the different contrasts
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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh
Diagram showing the experimental design and study workflow examining N'Dama (NDAM) and Boran (BORA) cattle
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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh
EnrichmentMap network of significantly enriched gene ontology (GO) terms identified from g:Profiler functional enrichment of significantly differentially expressed genes (DEGs) for the response contrasts at all time points
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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh
Volcano plot showing the results of the RESP contrast for the peripheral blood mononuclear cell (PBMC) samples at 34 days post-infection (dpi)
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Gillian P. McHugo, James A. Ward, John A. Browne, Grace M. O'Gorman, Kieran G. Meade, Emmeline W. Hill, Thomas J. Hall, David E. MacHugh